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Clemex

Image Analysis for Academia and Research

Research laboratories rarely measure the same thing twice. A department runs a funded program on additive alloys one semester, a contract study for an industrial partner the next, and an undergraduate metallography lab throughout, all on the same microscope, with students who rotate out every year. Clemex is built for exactly that: one platform where any analysis can be created, validated, locked and reused, where AI detection is trained by the domain expert rather than a data scientist, and where every number stays traceable to the field it came from. The result is quantitative microscopy that survives peer review, transfers between cohorts, and holds up when an industrial sponsor asks how the figure was obtained.

Learn more about Clemex solutions

Research capabilities

Different Research Fields, One Analysis Platform

Academic laboratories need breadth first and depth on demand. Clemex Vision ships a library of standard-referenced routines for the measurements taught and reported everywhere, while Clemex Studio lets a researcher train AI detection on a material nobody has imaged before, without writing code. Browse by research field below, or switch to the measurement view if you already know the quantity you need.

Browse by

Research field

Materials science · Metallurgy

Metallography

8 analyses

The discipline the platform was built for, and the one where standards are strictest. Chart comparison and hand-placed measurements give way to standard-referenced numbers that transfer between operators, cohorts and institutions.

Standard-referenced Teaching classics Full distributions

Electrical eng · Microelectronics

Electronic Devices & Packaging

7 analyses

Device reliability research lives in cross-sections: what is the layer thickness, how much void is in the joint, did the intermetallic grow after thermal cycling. These are counting and thickness problems at small scale, on images that are often SEM rather than optical.

SEM compatible Cross-section metrology Reliability studies

Optics · Photonics · Optical eng

Optics & Photonics

6 analyses

Optical components fail on defects that are too small and too numerous to count by eye, and inspection by a trained technician is famously inconsistent between people. Automated counting turns a subjective surface assessment into a defect density with a size distribution behind it.

  • Surface defect, scratch and dig counting by size class
  • Bubble and inclusion counting in glass and crystals
  • Fiber optic cross-section: core, cladding, concentricity
  • Polishing and lapping damage assessment
  • Edge chip and subsurface damage quantification
  • Waveguide and micro-optic geometry measurement
Defect density Large-area mosaics Operator-independent

Biology · Life sciences · Biomaterials

Biology & Life Sciences

7 analyses

Biological samples are where no standard was ever written, contrast is poor and every study measures something slightly different. Trainable detection handles what thresholding cannot, and the routine is built once for a study that may never be repeated.

  • Tissue section morphometry: area, length, perimeter
  • Cell and nucleus counting with shape descriptors
  • Leaf vein network area against total leaf area
  • Insect and specimen part morphometry
  • Pollen and spore classification by morphology
  • Scaffold and implant porosity and interconnectivity
  • Biocompatible coating thickness on implants
AI detection Color analysis Custom routines

Energy · Chemical eng

Batteries & Energy Materials

6 analyses

One of the fastest-growing areas in academic characterization, and one where phase contrast defeats classical methods. Trainable detection has been applied to demanding cases such as cross-sectioned lithium-ion cathodes.

  • Cathode and anode cross-section particle detection
  • Electrode coating thickness and uniformity
  • Electrode porosity and active material fraction
  • Binder and conductive additive distribution
  • Membrane and separator layer measurement
  • Cracking and degradation after cycling
SEM compatible Trainable AI Cycling studies

AM · Powder metallurgy

Additive Manufacturing

6 analyses

In a process-parameter study the defect population is the dependent variable, which means the analysis has to be byte-for-byte identical across every build in the matrix. Locked routines make a printer parameter sweep comparable months apart.

  • Porosity fraction, size and spatial distribution
  • Lack-of-fusion versus spherical gas pore classification
  • Melt pool geometry and overlap measurement
  • Feedstock powder sizing, shape and satellites
  • Build-direction grain morphology and anisotropy
  • Post-processing effect on defect population
Parameter sweeps Locked routines Batch comparable

Polymers · Composites · Ceramics

Non-Metallic Structural Materials

7 analyses

Composite and ceramic performance is governed by what the microstructure contains and how it is distributed. These measurements are the ones that correlate with the mechanical test the group already runs.

  • Fiber volume fraction in laminates
  • Fiber length, diameter and orientation distribution
  • Void content and delamination in composites
  • Filler and reinforcement dispersion quality
  • Ceramic grain size and sintering evaluation
  • Ceramic and refractory porosity quantification
  • Spherulite and polymer phase morphology
Dispersion metrics Orientation analysis AI detection

Geology · Mining · Earth sciences

Geology & Mineralogy

6 analyses

Thin section petrography is point counting by another name, and it is exactly the task automation was invented for. Color and texture-based detection separates phases that a threshold cannot.

  • Mineral grain size and shape distribution
  • Modal composition by phase area percentage
  • Porosity and pore connectivity in thin section
  • Mineral liberation and particle counting in ore
  • Coal petrography and maceral quantification
  • Fracture and vein network characterization
Color detection Automated point count Large mosaics

Pharma · Agri-food · Natural products

Pharmaceutical & Food Science

6 analyses

Formulation and product structure research needs number-based distributions with the images retained, not just an ensemble average. Every measured object stays inspectable when a result needs defending.

  • Active ingredient particle sizing and shape
  • Tablet and capsule coating thickness
  • Excipient dispersion and agglomeration
  • Food microstructure and color distribution
  • Starch granule and fiber measurement
  • Foreign particle detection and classification
Per-particle data Color analysis Powder disperser

Measurement type

Material Microstructure

7 analyses

The core of quantitative metallography and the measurements most theses open with. AI-assisted boundary detection copes with twins, incomplete boundaries and the uneven etch quality that is routine when samples are prepared by students.

Full distribution Confidence intervals AI detection

Defects, Inclusions & Cleanliness

6 analyses

Everything the material should not contain, sized, counted and classified by morphology. In process-parameter studies these are usually the dependent variable, so the analysis has to be identical across every specimen in the matrix.

Shape classification Full section scan Batch comparable

Particles, Powders & Fibers

6 analyses

Per-object measurement rather than an ensemble average, so every outlier keeps the image behind it. When a reviewer asks what the tail of the distribution actually looks like, the answer is a micrograph, not an assumption.

Per-particle data Number-based distribution Image-linked outliers

Coatings, Layers & Interfaces

6 analyses

Thousands of perpendicular measurements along a cross-section instead of a handful of hand-placed calipers. Thickness works on any detected shape including open contours, which extends the method well past anything designed as a coating.

  • Coating thickness with full statistics ASTM B 487
  • Multilayer stack measurement, layer by layer
  • Case depth and diffusion layer profiling
  • Thermal spray porosity, oxides and unmelted particles
  • Electrode and thin-film coating uniformity
  • Thickness on open contours: walls, membranes, interfaces
Min / max / mean / SD Multi-layer Interface integrity

Solidification & Cast Structures

6 analyses

The measurements that link processing conditions to structure. Automating them removes the operator-to-operator scatter that otherwise competes with the effect being studied, which matters when the cooling-rate correlation is the finding.

  • Secondary dendrite arm spacing
  • Nodularity and graphite form classification ASTM A247 / ISO 945
  • Nodule count per unit area
  • Eutectic fraction and morphology
  • Shrinkage versus gas porosity discrimination
  • Columnar to equiaxed transition mapping
Cooling rate studies Teaching classic Reproducible

Hardness & Property Mapping

5 analyses

Automatic indent detection, diagonal measurement and conversion, with unattended traverses and grids. An afternoon at the eyepiece per specimen becomes an overnight run and a morning of data.

  • Vickers & Knoop automatic indent measurement ASTM E384 / E92
  • Case depth traverses with automatic profiling
  • Hardness maps across welds and heat-affected zones
  • Indent validation, flagging and automatic retest
  • Correlation of hardness with local microstructure
Unattended runs Grid mapping Traceable indents

AI-enabled

Novel Materials & Custom Research

8 analyses

The bundle that exists because no standard was written for what your group is studying. Annotate a handful of representative images in Clemex Studio, train a model in minutes and validate it on images the model has never seen. This is where a configurable platform earns its place, because the routine is built once for a study that may never be repeated.

  • Trainable AI detection on any material
  • Low-contrast feature detection beyond thresholding
  • Battery electrode and cross-sectioned cathode structure
  • Composite, polymer and multi-material morphology
  • Biological morphometry: tissue, leaf vein networks, pollen
  • Agri-food microstructure and color distribution
  • Mineral and geological grain characterization
  • Bespoke routines built to your specification
No coding 1–10 images to start Pretrained models SEM compatible

Why research labs choose Clemex

Built for Reproducibility, Not Just Results

A measurement that cannot be repeated by the next student, in the next lab, on the next microscope, is a liability in a publication and a problem in a sponsored study. These are the capabilities that make quantitative microscopy transferable.

Any Material, Any Routine, One System

An unlimited number of distinct routines can run on the same installation, drawn from the existing application library or built for a material that has never been imaged in your lab. Departments do not need a separate instrument per research theme.

Clemex Vision

AI Detection Without a Data Scientist

Annotate, train, validate. The researcher who understands the material builds the detection method, in minutes, with no coding and no waiting on external collaborators. Pretrained microscopy models shorten what would otherwise take days from a blank model.

Clemex Studio

Analysis Methods You Can Publish and Defend

Every parameter of a routine is explicit and saved, so the methods section describes an executable procedure rather than a narrative. Reviewers and collaborators can be handed the same routine, and it produces the same numbers.

Clemex Vision

Validation on Unseen Images

The Validate step compares annotations against algorithm output on images excluded from training, and compares the metric you will actually report, not just mask appearance. That is the difference between a model that looks right and one that generalizes to a new etch or a new batch.

Clemex Studio

Your Data Stays Yours

Projects and results export in open formats at any time, with no lock-in on the data behind a thesis or a grant deliverable. Raw measurements remain linked to the field they came from, so a figure can always be traced back to an image.

Export & data browser

Runs Local, Air-Gapped if Required

On-premises operation on a lab PC, with images and models staying on your machine and no internet connection required. For confidential industrial collaborations and institutions with strict IT policy, this removes the data-residency conversation entirely.

Deployment options

Designed for Rotating Students

A validated routine can be locked so that operators execute it without altering parameters, which keeps a multi-year dataset consistent as cohorts change. New students learn to run the analysis in a session instead of inheriting an undocumented workflow.

Routine locking

Large-Area Statistics, Unattended

Motorized stage scanning, mosaic reconstruction and multi-sample batch runs give statistically meaningful field counts and let features be measured across the whole specimen rather than truncated at a field edge. Overnight runs turn into a morning of data.

Systems & automation

Departments and facilities

From Undergraduate Teaching Labs to National Research Centers

Clemex systems are deployed in university materials laboratories, shared microscopy and characterization core facilities, technical colleges, government and national research centers, and institutional laboratories that carry out contract testing for industry. The same platform supports a first-year metallography exercise, a doctoral program and an industry-funded study.

Materials Science & Engineering Metallurgy & Mining Mechanical Engineering Ceramics & Glass Polymers & Composites Additive Manufacturing Battery & Energy Materials Biomedical & Life Sciences Pharmaceutical Sciences Geology & Earth Sciences Welding & Joining Research Core Microscopy Facilities Technical Colleges & CEGEPs Government & National Labs Contract & Testing Laboratories

Collaboration & innovation

Work With Clemex, Not Just On Clemex

Academic partnerships are where new analysis methods come from. Researchers bring materials and questions that no commercial routine anticipates, and those problems shape what the platform can measure next. If your group is planning a program, writing a proposal, or facing a measurement that nothing currently solves, we would rather be involved early than quoted late.

Joint Method Development

Bring a measurement problem that has no established routine and work with our application specialists to define, build and validate one. Methods developed this way are validated on your own images, against your own reference measurements, and remain yours to run and adapt.

Propose a method development project

Proposal & Equipment Specification Support

Grant applications and institutional tenders need defensible technical specifications, realistic scope and a budget that survives review. We can help draft the equipment section, define what the system must demonstrate, and provide the documentation your research office asks for.

Request specification support

Training, Workshops & Curriculum

On-site installation and training are included with a system, and can be extended into workshops for graduate cohorts or teaching material for an undergraduate metallography module. Students who learn quantitative image analysis during training carry the skill into industry.

Arrange training for your group

AI Project Guidance, From Coaching to Turnkey

A first AI detection project raises real questions: which images to annotate, how much training is enough, how to validate before results are reported. Engage us for an afternoon of coaching or for a fully managed project delivered as a method your lab can run and fine-tune afterwards.

Studio services for research teams

Publications, Citations & Application Notes

Work developed with your group can be written up as an application note that gives the method visibility beyond a single paper, and gives your laboratory a reference other researchers can cite and reproduce. Existing published work using Clemex is searchable on Google Scholar.

Browse published work on Google Scholar

Shared Projects Across Institutions

Multi-site studies and industrial collaborations fail when each partner segments images differently. Projects, annotations and methods can be shared through a single link, so a consortium measures the same way and the round-robin comparison becomes meaningful.

Collaboration features in Studio

Tailored systems

A Complete System, Sized to Your Laboratory

Configurations range from software added to microscopes you already own, through a shared characterization station for a whole department, to a fully automated system for a funded research program.

Tailored Hardware Integration

Typically an inverted or upright metallurgical microscope, a motorized stage and a high-resolution camera, selected to fit your analysis needs and your available bench space. Clemex ensures seamless integration of all components, with on-site installation and training included.

Microscopy Systems & Imaging Hardware

Works With the Instruments You Have

Import images from SEMs, existing micrograph libraries and other acquisition systems. Clemex analyzes any digital image without proprietary hardware requirements, so a shared facility can add quantitative analysis without replacing microscopes that are already funded and installed.

Clemex Captiva, Image Acquisition

Routine Creation Service

Provide your analysis specifications, measurement parameters and reporting needs, and our specialists will configure and validate the complete routine in the software for you. Useful when a study starts before the person who will run it has been recruited.

Contact us for routine creation

What Lab Managers Usually Ask First

Can we use Clemex with our existing microscopes and SEM images?

Yes. Clemex analyzes any digital image, so micrograph libraries, SEM images and images from other acquisition systems can be imported and measured. A full turnkey system with motorized stage and camera is available when automation and unattended scanning are needed, but it is not a prerequisite for the software.

How much AI expertise does our group need?

None in the machine-learning sense. Clemex Studio is designed for domain experts: you annotate features on representative images, train with one click, and validate on images not used in training. Often one to ten annotated images are enough to start, and pretrained microscopy models shorten the path further. What the work does require is materials expertise, which is what your group already has.

Will results be consistent as students come and go?

That is the main reason academic labs automate. A validated routine can be locked so operators run it without changing parameters, and the parameters themselves are saved rather than living in someone's notebook. A dataset started by one doctoral student remains comparable when a new cohort continues it.

Does the software need internet access, and where does our data live?

On-premises operation runs on a local lab PC with images and models staying on your machine, and can operate without internet access when institutional IT policy requires it, including air-gapped environments. A Clemex-hosted option exists separately, with data residency and access defined contractually. Confirm licensing and update mechanics with us for your specific deployment.

Can we get the data out for our own statistics and figures?

Yes. Project and data-browser exports are available at any time in open formats, and measurements stay linked to the field they came from. Analysis can continue in R, Python or whatever your group already uses for statistics, without being locked into the reporting layer.

Our measurement is unusual and may never be repeated. Is that worth automating?

Often yes, and this is the case academic labs underestimate. A configurable platform is built precisely for analyses that are intricate, atypical, or unlikely to be seen again, where writing custom code would cost more time than the study can spare. If you are unsure, send a few representative images and we will tell you honestly whether automation is worthwhile.

We are writing a grant. What do you need from us, and when?

Earlier is better. Specifications, quotations and the technical justification your research office requires are easier to prepare before a submission deadline than after an award has fixed the budget. Tell us the measurements the program depends on and the timeline, and we will work back from there.

Planning a study, a proposal, or a new laboratory?

Send us representative images from your own material and we will show you what an automated analysis of them looks like. On-site demonstrations and remote sessions for research groups are available.

Related analyses

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